Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDJ84455.1 | SDK11146.1 | SAMN04487954_108167 | SAMN04487954_111121 | Chorismate mutase. | 4-hydroxyphenylpyruvate dioxygenase. | 0.739 |
SDJ84455.1 | SDK11188.1 | SAMN04487954_108167 | SAMN04487954_111122 | Chorismate mutase. | Shikimate dehydrogenase. | 0.843 |
SDJ84455.1 | SDK75541.1 | SAMN04487954_108167 | SAMN04487954_1293 | Chorismate mutase. | Shikimate dehydrogenase. | 0.826 |
SDJ84455.1 | aroA | SAMN04487954_108167 | SAMN04487954_108166 | Chorismate mutase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.999 |
SDJ84455.1 | aroB | SAMN04487954_108167 | SAMN04487954_103241 | Chorismate mutase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.918 |
SDJ84455.1 | aroE | SAMN04487954_108167 | SAMN04487954_11381 | Chorismate mutase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.858 |
SDJ84455.1 | aroK | SAMN04487954_108167 | SAMN04487954_103242 | Chorismate mutase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.949 |
SDJ84455.1 | aroQ | SAMN04487954_108167 | SAMN04487954_11573 | Chorismate mutase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.714 |
SDJ84455.1 | ilvE-2 | SAMN04487954_108167 | SAMN04487954_11574 | Chorismate mutase. | Branched chain amino acid aminotransferase apoenzyme; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. | 0.801 |
SDK11146.1 | SDJ84455.1 | SAMN04487954_111121 | SAMN04487954_108167 | 4-hydroxyphenylpyruvate dioxygenase. | Chorismate mutase. | 0.739 |
SDK11146.1 | SDK11188.1 | SAMN04487954_111121 | SAMN04487954_111122 | 4-hydroxyphenylpyruvate dioxygenase. | Shikimate dehydrogenase. | 0.967 |
SDK11146.1 | SDK75541.1 | SAMN04487954_111121 | SAMN04487954_1293 | 4-hydroxyphenylpyruvate dioxygenase. | Shikimate dehydrogenase. | 0.735 |
SDK11146.1 | aroA | SAMN04487954_111121 | SAMN04487954_108166 | 4-hydroxyphenylpyruvate dioxygenase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.525 |
SDK11146.1 | aroB | SAMN04487954_111121 | SAMN04487954_103241 | 4-hydroxyphenylpyruvate dioxygenase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.419 |
SDK11146.1 | aroE | SAMN04487954_111121 | SAMN04487954_11381 | 4-hydroxyphenylpyruvate dioxygenase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.693 |
SDK11146.1 | aroQ | SAMN04487954_111121 | SAMN04487954_11573 | 4-hydroxyphenylpyruvate dioxygenase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.677 |
SDK11146.1 | ilvE-2 | SAMN04487954_111121 | SAMN04487954_11574 | 4-hydroxyphenylpyruvate dioxygenase. | Branched chain amino acid aminotransferase apoenzyme; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. | 0.566 |
SDK11188.1 | SDJ84455.1 | SAMN04487954_111122 | SAMN04487954_108167 | Shikimate dehydrogenase. | Chorismate mutase. | 0.843 |
SDK11188.1 | SDK11146.1 | SAMN04487954_111122 | SAMN04487954_111121 | Shikimate dehydrogenase. | 4-hydroxyphenylpyruvate dioxygenase. | 0.967 |
SDK11188.1 | aroA | SAMN04487954_111122 | SAMN04487954_108166 | Shikimate dehydrogenase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.887 |
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