Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDI89909.1 | SDJ46589.1 | SAMN04487954_10233 | SAMN04487954_1059 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA topoisomerase-3. | 0.562 |
SDI89909.1 | SDK68894.1 | SAMN04487954_10233 | SAMN04487954_12352 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA topoisomerase-3. | 0.562 |
SDI89909.1 | ligA | SAMN04487954_10233 | SAMN04487954_103207 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.689 |
SDI89909.1 | ligB | SAMN04487954_10233 | SAMN04487954_11818 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA ligase (NAD+); Catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. Belongs to the NAD-dependent DNA ligase family. LigB subfamily. | 0.637 |
SDI89909.1 | topA | SAMN04487954_10233 | SAMN04487954_104269 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.562 |
SDJ46589.1 | SDI89909.1 | SAMN04487954_1059 | SAMN04487954_10233 | DNA topoisomerase-3. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.562 |
SDJ46589.1 | SDK68894.1 | SAMN04487954_1059 | SAMN04487954_12352 | DNA topoisomerase-3. | DNA topoisomerase-3. | 0.512 |
SDJ46589.1 | leuS | SAMN04487954_1059 | SAMN04487954_104245 | DNA topoisomerase-3. | leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.975 |
SDJ46589.1 | ligA | SAMN04487954_1059 | SAMN04487954_103207 | DNA topoisomerase-3. | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.639 |
SDJ46589.1 | ligB | SAMN04487954_1059 | SAMN04487954_11818 | DNA topoisomerase-3. | DNA ligase (NAD+); Catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. Belongs to the NAD-dependent DNA ligase family. LigB subfamily. | 0.639 |
SDJ46589.1 | rep | SAMN04487954_1059 | SAMN04487954_11036 | DNA topoisomerase-3. | ATP-dependent DNA helicase Rep; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction. | 0.562 |
SDJ46589.1 | topA | SAMN04487954_1059 | SAMN04487954_104269 | DNA topoisomerase-3. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.509 |
SDK24003.1 | ligA | SAMN04487954_11388 | SAMN04487954_103207 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.633 |
SDK24003.1 | ligB | SAMN04487954_11388 | SAMN04487954_11818 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | DNA ligase (NAD+); Catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. Belongs to the NAD-dependent DNA ligase family. LigB subfamily. | 0.633 |
SDK68894.1 | SDI89909.1 | SAMN04487954_12352 | SAMN04487954_10233 | DNA topoisomerase-3. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.562 |
SDK68894.1 | SDJ46589.1 | SAMN04487954_12352 | SAMN04487954_1059 | DNA topoisomerase-3. | DNA topoisomerase-3. | 0.512 |
SDK68894.1 | leuS | SAMN04487954_12352 | SAMN04487954_104245 | DNA topoisomerase-3. | leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.975 |
SDK68894.1 | ligA | SAMN04487954_12352 | SAMN04487954_103207 | DNA topoisomerase-3. | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.639 |
SDK68894.1 | ligB | SAMN04487954_12352 | SAMN04487954_11818 | DNA topoisomerase-3. | DNA ligase (NAD+); Catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. Belongs to the NAD-dependent DNA ligase family. LigB subfamily. | 0.639 |
SDK68894.1 | rep | SAMN04487954_12352 | SAMN04487954_11036 | DNA topoisomerase-3. | ATP-dependent DNA helicase Rep; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction. | 0.562 |
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