STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK55677.1EamA-like transporter family protein. (302 aa)    
Predicted Functional Partners:
SDK55611.1
Hypothetical protein.
       0.776
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.705
SDJ36519.1
Ca2+-binding protein, RTX toxin-related.
  
     0.611
SDK62167.1
2-methylcitrate dehydratase PrpD.
  
     0.580
SDJ60971.1
ISXO2-like transposase domain-containing protein.
  
     0.547
SDI82482.1
Hypothetical protein.
  
     0.543
SDK37145.1
Membrane-bound acyltransferase YfiQ, involved in biofilm formation.
  
     0.522
SDJ54296.1
Sucrose porin.
  
     0.497
SDJ61007.1
Transposase zinc-ribbon domain-containing protein.
  
     0.488
SDK70760.1
Hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.488
Your Current Organism:
Halomonas gudaonensis
NCBI taxonomy Id: 376427
Other names: CGMCC 1.6133, H. gudaonensis, Halomonas gudaonensis Wang et al. 2007, LMG 23610, LMG:23610, strain SL014B-69
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.