A0A0L8GDU1 protein (Octopus bimaculoides) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0L8GDU1

UmuC domain-containing protein. (641 aa)

Predicted Functional Partners:

A0A0L8HAB4

0.972

A0A0L8I334

0.972

A0A0L8HMU1

0.948

A0A0L8GXC6

0.944

A0A0L8FI38

0.916

A0A0L8H509

0.882

A0A0L8IFH5

0.842

A0A0L8GWK4

0.840

A0A0L8I871

0.836

A0A0L8HYN3

0.795

Your Current Organism:

Octopus bimaculoides

NCBI taxonomy Id: 37653
Other names: O. bimaculoides

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0L8FI38	A0A0L8GDU1	Uncharacterized protein.	UmuC domain-containing protein.	0.916
A0A0L8FI38	A0A0L8GWK4	Uncharacterized protein.	DDE_Tnp_1_7 domain-containing protein.	0.840
A0A0L8FI38	A0A0L8GXC6	Uncharacterized protein.	UmuC domain-containing protein.	0.934
A0A0L8FI38	A0A0L8H509	Uncharacterized protein.	Uncharacterized protein.	0.882
A0A0L8FI38	A0A0L8HAB4	Uncharacterized protein.	HORMA domain-containing protein.	0.972
A0A0L8FI38	A0A0L8HMU1	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.948
A0A0L8FI38	A0A0L8HYN3	Uncharacterized protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.795
A0A0L8FI38	A0A0L8I334	Uncharacterized protein.	UmuC domain-containing protein.	0.970
A0A0L8FI38	A0A0L8I871	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.836
A0A0L8FI38	A0A0L8IFH5	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.842
A0A0L8GDU1	A0A0L8FI38	UmuC domain-containing protein.	Uncharacterized protein.	0.916
A0A0L8GDU1	A0A0L8GWK4	UmuC domain-containing protein.	DDE_Tnp_1_7 domain-containing protein.	0.840
A0A0L8GDU1	A0A0L8GXC6	UmuC domain-containing protein.	UmuC domain-containing protein.	0.944
A0A0L8GDU1	A0A0L8H509	UmuC domain-containing protein.	Uncharacterized protein.	0.882
A0A0L8GDU1	A0A0L8HAB4	UmuC domain-containing protein.	HORMA domain-containing protein.	0.972
A0A0L8GDU1	A0A0L8HMU1	UmuC domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.948
A0A0L8GDU1	A0A0L8HYN3	UmuC domain-containing protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.795
A0A0L8GDU1	A0A0L8I334	UmuC domain-containing protein.	UmuC domain-containing protein.	0.972
A0A0L8GDU1	A0A0L8I871	UmuC domain-containing protein.	Ubiquitin-like domain-containing protein.	0.836
A0A0L8GDU1	A0A0L8IFH5	UmuC domain-containing protein.	Ubiquitin-like domain-containing protein.	0.842