STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR55943.1Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family. (131 aa)    
Predicted Functional Partners:
SFR55925.1
Ornithine cyclodeaminase.
 
     0.741
SFR55872.1
Sarcosine oxidase subunit beta.
 
     0.706
SFR55886.1
BFD-like [2Fe-2S] binding domain-containing protein.
 
     0.698
SFR94064.1
Chorismate mutase.
    
  0.655
SFR55899.1
Thioredoxin reductase.
       0.643
SFR55912.1
2Fe-2S iron-sulfur cluster binding domain-containing protein.
       0.642
SFR55857.1
Amino acid transporter.
 
     0.586
SFR55956.1
Helix-turn-helix domain-containing protein.
 
     0.561
Your Current Organism:
Clostridium populeti
NCBI taxonomy Id: 37658
Other names: ATCC 35295, DSM 5832, [. populeti, [Clostridium] populeti, strain 743A
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