STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR94381.1Protein of unknown function. (136 aa)    
Predicted Functional Partners:
SFR94373.1
Hypothetical protein.
 
     0.949
SFR59034.1
Anti-sigma-28 factor, FlgM family.
  
 0.918
SFR94389.1
5-methylcytosine-specific restriction enzyme A.
 
     0.826
SFR94351.1
Hypothetical protein.
 
     0.817
SFR94291.1
Hypothetical protein.
 
     0.797
SFR94363.1
SNF2 family N-terminal domain-containing protein.
       0.790
SFR94275.1
RNA polymerase sigma factor, sigma-70 family.
 
     0.782
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.778
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.776
SFR94325.1
Anti-repressor protein.
 
     0.768
Your Current Organism:
Clostridium populeti
NCBI taxonomy Id: 37658
Other names: ATCC 35295, DSM 5832, [. populeti, [Clostridium] populeti, strain 743A
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