Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFR57149.1 | der | SAMN05661086_00207 | SAMN05661086_03116 | GTP-binding protein. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.694 |
SFR68334.1 | cmk | SAMN05661086_00951 | SAMN05661086_02395 | 23S rRNA pseudouridine2604 synthase; Belongs to the pseudouridine synthase RsuA family. | Cytidylate kinase. | 0.816 |
SFR68334.1 | der | SAMN05661086_00951 | SAMN05661086_03116 | 23S rRNA pseudouridine2604 synthase; Belongs to the pseudouridine synthase RsuA family. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.655 |
SFR96098.1 | cmk | SAMN05661086_02876 | SAMN05661086_02395 | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | Cytidylate kinase. | 0.779 |
SFR96098.1 | der | SAMN05661086_02876 | SAMN05661086_03116 | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.690 |
SFR99364.1 | der | SAMN05661086_03115 | SAMN05661086_03116 | Putative radical SAM enzyme, TIGR03279 family. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.860 |
SFR99364.1 | gpsA | SAMN05661086_03115 | SAMN05661086_03118 | Putative radical SAM enzyme, TIGR03279 family. | Glycerol 3-phosphate dehydrogenase (NAD(P)+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.720 |
SFR99364.1 | plsY | SAMN05661086_03115 | SAMN05661086_03117 | Putative radical SAM enzyme, TIGR03279 family. | Glycerol-3-phosphate acyltransferase PlsY; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP. | 0.773 |
cmk | SFR68334.1 | SAMN05661086_02395 | SAMN05661086_00951 | Cytidylate kinase. | 23S rRNA pseudouridine2604 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.816 |
cmk | SFR96098.1 | SAMN05661086_02395 | SAMN05661086_02876 | Cytidylate kinase. | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.779 |
cmk | der | SAMN05661086_02395 | SAMN05661086_03116 | Cytidylate kinase. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.977 |
cmk | ffh | SAMN05661086_02395 | SAMN05661086_03102 | Cytidylate kinase. | Signal recognition particle subunit FFH/SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.724 |
cmk | ftsY | SAMN05661086_02395 | SAMN05661086_02387 | Cytidylate kinase. | Fused signal recognition particle receptor; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.601 |
der | SFR57149.1 | SAMN05661086_03116 | SAMN05661086_00207 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | GTP-binding protein. | 0.694 |
der | SFR68334.1 | SAMN05661086_03116 | SAMN05661086_00951 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 23S rRNA pseudouridine2604 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.655 |
der | SFR96098.1 | SAMN05661086_03116 | SAMN05661086_02876 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.690 |
der | SFR99364.1 | SAMN05661086_03116 | SAMN05661086_03115 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Putative radical SAM enzyme, TIGR03279 family. | 0.860 |
der | cmk | SAMN05661086_03116 | SAMN05661086_02395 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Cytidylate kinase. | 0.977 |
der | dnaG | SAMN05661086_03116 | SAMN05661086_01965 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.724 |
der | ffh | SAMN05661086_03116 | SAMN05661086_03102 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Signal recognition particle subunit FFH/SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.674 |
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