Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BD821_10344 | BD821_11446 | GCA_000703125_01974 | GCA_000703125_01308 | Unannotated protein. | Unannotated protein; Belongs to the MurCDEF family. | 0.919 |
BD821_10344 | ddl | GCA_000703125_01974 | GCA_000703125_01763 | Unannotated protein. | Unannotated protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.458 |
BD821_10344 | mraY | GCA_000703125_01974 | GCA_000703125_02543 | Unannotated protein. | Unannotated protein; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.955 |
BD821_10344 | murA | GCA_000703125_01974 | GCA_000703125_00945 | Unannotated protein. | Unannotated protein; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.601 |
BD821_10344 | murB | GCA_000703125_01974 | GCA_000703125_01487 | Unannotated protein. | Unannotated protein; Cell wall formation. | 0.838 |
BD821_10344 | murC | GCA_000703125_01974 | GCA_000703125_00812 | Unannotated protein. | Unannotated protein; Cell wall formation; Belongs to the MurCDEF family. | 0.968 |
BD821_10344 | murD | GCA_000703125_01974 | GCA_000703125_00770 | Unannotated protein. | Unannotated protein; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.982 |
BD821_10344 | murE | GCA_000703125_01974 | GCA_000703125_02545 | Unannotated protein. | Unannotated protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.458 |
BD821_10344 | murF | GCA_000703125_01974 | GCA_000703125_02544 | Unannotated protein. | Unannotated protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.981 |
BD821_10344 | murG | GCA_000703125_01974 | GCA_000703125_02833 | Unannotated protein. | Unannotated protein; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.937 |
BD821_11446 | BD821_10344 | GCA_000703125_01308 | GCA_000703125_01974 | Unannotated protein; Belongs to the MurCDEF family. | Unannotated protein. | 0.919 |
BD821_11446 | ddl | GCA_000703125_01308 | GCA_000703125_01763 | Unannotated protein; Belongs to the MurCDEF family. | Unannotated protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.458 |
BD821_11446 | mraY | GCA_000703125_01308 | GCA_000703125_02543 | Unannotated protein; Belongs to the MurCDEF family. | Unannotated protein; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.962 |
BD821_11446 | murA | GCA_000703125_01308 | GCA_000703125_00945 | Unannotated protein; Belongs to the MurCDEF family. | Unannotated protein; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.658 |
BD821_11446 | murB | GCA_000703125_01308 | GCA_000703125_01487 | Unannotated protein; Belongs to the MurCDEF family. | Unannotated protein; Cell wall formation. | 0.838 |
BD821_11446 | murC | GCA_000703125_01308 | GCA_000703125_00812 | Unannotated protein; Belongs to the MurCDEF family. | Unannotated protein; Cell wall formation; Belongs to the MurCDEF family. | 0.972 |
BD821_11446 | murD | GCA_000703125_01308 | GCA_000703125_00770 | Unannotated protein; Belongs to the MurCDEF family. | Unannotated protein; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.982 |
BD821_11446 | murE | GCA_000703125_01308 | GCA_000703125_02545 | Unannotated protein; Belongs to the MurCDEF family. | Unannotated protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.503 |
BD821_11446 | murF | GCA_000703125_01308 | GCA_000703125_02544 | Unannotated protein; Belongs to the MurCDEF family. | Unannotated protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.983 |
BD821_11446 | murG | GCA_000703125_01308 | GCA_000703125_02833 | Unannotated protein; Belongs to the MurCDEF family. | Unannotated protein; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.937 |
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