Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BD821_11554 | BD821_11555 | GCA_000703125_01003 | GCA_000703125_01004 | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Unannotated protein. | 0.831 |
BD821_11554 | BD821_11556 | GCA_000703125_01003 | GCA_000703125_01005 | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Unannotated protein. | 0.742 |
BD821_11554 | rplI | GCA_000703125_01003 | GCA_000703125_01002 | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Unannotated protein; Binds to the 23S rRNA. | 0.896 |
BD821_11554 | rpsF | GCA_000703125_01003 | GCA_000703125_01010 | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Unannotated protein; Binds together with S18 to 16S ribosomal RNA. | 0.548 |
BD821_11554 | rpsR | GCA_000703125_01003 | GCA_000703125_01008 | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Unannotated protein; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.556 |
BD821_11555 | BD821_11554 | GCA_000703125_01004 | GCA_000703125_01003 | Unannotated protein. | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | 0.831 |
BD821_11555 | BD821_11556 | GCA_000703125_01004 | GCA_000703125_01005 | Unannotated protein. | Unannotated protein. | 0.791 |
BD821_11555 | rplA | GCA_000703125_01004 | GCA_000703125_00724 | Unannotated protein. | Unannotated protein; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.770 |
BD821_11555 | rplI | GCA_000703125_01004 | GCA_000703125_01002 | Unannotated protein. | Unannotated protein; Binds to the 23S rRNA. | 0.938 |
BD821_11555 | rplJ | GCA_000703125_01004 | GCA_000703125_00723 | Unannotated protein. | Unannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.771 |
BD821_11555 | rplK | GCA_000703125_01004 | GCA_000703125_00725 | Unannotated protein. | Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.770 |
BD821_11555 | rpsF | GCA_000703125_01004 | GCA_000703125_01010 | Unannotated protein. | Unannotated protein; Binds together with S18 to 16S ribosomal RNA. | 0.856 |
BD821_11555 | rpsI | GCA_000703125_01004 | GCA_000703125_00677 | Unannotated protein. | Unannotated protein; Belongs to the universal ribosomal protein uS9 family. | 0.762 |
BD821_11555 | rpsR | GCA_000703125_01004 | GCA_000703125_01008 | Unannotated protein. | Unannotated protein; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.957 |
BD821_11555 | tsf | GCA_000703125_01004 | GCA_000703125_02572 | Unannotated protein. | Unannotated protein; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.771 |
BD821_11556 | BD821_11554 | GCA_000703125_01005 | GCA_000703125_01003 | Unannotated protein. | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | 0.742 |
BD821_11556 | BD821_11555 | GCA_000703125_01005 | GCA_000703125_01004 | Unannotated protein. | Unannotated protein. | 0.791 |
BD821_11556 | rplI | GCA_000703125_01005 | GCA_000703125_01002 | Unannotated protein. | Unannotated protein; Binds to the 23S rRNA. | 0.704 |
BD821_11556 | rpsF | GCA_000703125_01005 | GCA_000703125_01010 | Unannotated protein. | Unannotated protein; Binds together with S18 to 16S ribosomal RNA. | 0.584 |
BD821_11556 | rpsR | GCA_000703125_01005 | GCA_000703125_01008 | Unannotated protein. | Unannotated protein; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.597 |
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