STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BD821_11436Unannotated protein. (268 aa)    
Predicted Functional Partners:
BD821_102150
Unannotated protein.
   
 
  0.726
GCA_000703125_02177
Unannotated protein.
  
 
 
0.573
BD821_10781
Unannotated protein; Belongs to the ribF family.
   
 0.563
BD821_11437
Unannotated protein.
   
   0.527
ribH
Unannotated protein; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
     
 0.525
BD821_10570
Unannotated protein.
  
 
 0.507
BD821_10314
Unannotated protein.
  
 
 
0.472
BD821_12016
Unannotated protein.
     
 0.433
BD821_10151
Unannotated protein.
    
  0.412
BD821_101287
Unannotated protein.
     
 0.406
Your Current Organism:
Clostridium algidicarnis
NCBI taxonomy Id: 37659
Other names: C. algidicarnis, DSM 15099, NCFB 2931, NCIMB 702931
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.