Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BD821_10471 | GCA_000703125_01320 | GCA_000703125_00838 | GCA_000703125_01320 | Unannotated protein. | Unannotated protein. | 0.819 |
BD821_10471 | GCA_000703125_02289 | GCA_000703125_00838 | GCA_000703125_02289 | Unannotated protein. | Unannotated protein. | 0.794 |
BD821_10471 | gcvPB | GCA_000703125_00838 | GCA_000703125_00449 | Unannotated protein. | Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | 0.866 |
BD821_10471 | glyA | GCA_000703125_00838 | GCA_000703125_02697 | Unannotated protein. | Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.888 |
BD821_10471 | phnW | GCA_000703125_00838 | GCA_000703125_02876 | Unannotated protein. | Unannotated protein; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily. | 0.747 |
BD821_10979 | BD821_10981 | GCA_000703125_02290 | GCA_000703125_02292 | Unannotated protein; Belongs to the peptidase M16 family. | Unannotated protein. | 0.815 |
BD821_10979 | GCA_000703125_01320 | GCA_000703125_02290 | GCA_000703125_01320 | Unannotated protein; Belongs to the peptidase M16 family. | Unannotated protein. | 0.997 |
BD821_10979 | GCA_000703125_02289 | GCA_000703125_02290 | GCA_000703125_02289 | Unannotated protein; Belongs to the peptidase M16 family. | Unannotated protein. | 0.682 |
BD821_10979 | recX | GCA_000703125_02290 | GCA_000703125_02291 | Unannotated protein; Belongs to the peptidase M16 family. | Unannotated protein; Modulates RecA activity; Belongs to the RecX family. | 0.927 |
BD821_10981 | BD821_10979 | GCA_000703125_02292 | GCA_000703125_02290 | Unannotated protein. | Unannotated protein; Belongs to the peptidase M16 family. | 0.815 |
BD821_10981 | GCA_000703125_02289 | GCA_000703125_02292 | GCA_000703125_02289 | Unannotated protein. | Unannotated protein. | 0.621 |
BD821_10981 | recX | GCA_000703125_02292 | GCA_000703125_02291 | Unannotated protein. | Unannotated protein; Modulates RecA activity; Belongs to the RecX family. | 0.834 |
BD821_11265 | GCA_000703125_01320 | GCA_000703125_00299 | GCA_000703125_01320 | Unannotated protein. | Unannotated protein. | 0.616 |
BD821_11265 | GCA_000703125_02289 | GCA_000703125_00299 | GCA_000703125_02289 | Unannotated protein. | Unannotated protein. | 0.773 |
BD821_11265 | gcvPB | GCA_000703125_00299 | GCA_000703125_00449 | Unannotated protein. | Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | 0.784 |
BD821_11265 | glyA | GCA_000703125_00299 | GCA_000703125_02697 | Unannotated protein. | Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.804 |
GCA_000703125_01320 | BD821_10471 | GCA_000703125_01320 | GCA_000703125_00838 | Unannotated protein. | Unannotated protein. | 0.819 |
GCA_000703125_01320 | BD821_10979 | GCA_000703125_01320 | GCA_000703125_02290 | Unannotated protein. | Unannotated protein; Belongs to the peptidase M16 family. | 0.997 |
GCA_000703125_01320 | BD821_11265 | GCA_000703125_01320 | GCA_000703125_00299 | Unannotated protein. | Unannotated protein. | 0.616 |
GCA_000703125_01320 | GCA_000703125_01830 | GCA_000703125_01320 | GCA_000703125_01830 | Unannotated protein. | Unannotated protein. | 0.447 |
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