Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BD821_10557 | BD821_10610 | GCA_000703125_01526 | GCA_000703125_00753 | Unannotated protein. | Unannotated protein. | 0.985 |
BD821_10557 | BD821_10991 | GCA_000703125_01526 | GCA_000703125_02300 | Unannotated protein. | Unannotated protein. | 0.920 |
BD821_10557 | BD821_11560 | GCA_000703125_01526 | GCA_000703125_01009 | Unannotated protein. | Unannotated protein. | 0.920 |
BD821_10557 | dnaX | GCA_000703125_01526 | GCA_000703125_01121 | Unannotated protein. | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.987 |
BD821_10557 | topA | GCA_000703125_01526 | GCA_000703125_02575 | Unannotated protein. | Unannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.561 |
BD821_10557 | topB | GCA_000703125_01526 | GCA_000703125_01948 | Unannotated protein. | Unannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.561 |
BD821_10610 | BD821_10557 | GCA_000703125_00753 | GCA_000703125_01526 | Unannotated protein. | Unannotated protein. | 0.985 |
BD821_10610 | BD821_10989 | GCA_000703125_00753 | GCA_000703125_02298 | Unannotated protein. | Unannotated protein. | 0.712 |
BD821_10610 | BD821_10991 | GCA_000703125_00753 | GCA_000703125_02300 | Unannotated protein. | Unannotated protein. | 0.889 |
BD821_10610 | BD821_11560 | GCA_000703125_00753 | GCA_000703125_01009 | Unannotated protein. | Unannotated protein. | 0.858 |
BD821_10610 | dnaX | GCA_000703125_00753 | GCA_000703125_01121 | Unannotated protein. | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.930 |
BD821_10610 | topA | GCA_000703125_00753 | GCA_000703125_02575 | Unannotated protein. | Unannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.488 |
BD821_10610 | topB | GCA_000703125_00753 | GCA_000703125_01948 | Unannotated protein. | Unannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.488 |
BD821_10989 | BD821_10610 | GCA_000703125_02298 | GCA_000703125_00753 | Unannotated protein. | Unannotated protein. | 0.712 |
BD821_10989 | BD821_10991 | GCA_000703125_02298 | GCA_000703125_02300 | Unannotated protein. | Unannotated protein. | 0.906 |
BD821_10991 | BD821_10557 | GCA_000703125_02300 | GCA_000703125_01526 | Unannotated protein. | Unannotated protein. | 0.920 |
BD821_10991 | BD821_10610 | GCA_000703125_02300 | GCA_000703125_00753 | Unannotated protein. | Unannotated protein. | 0.889 |
BD821_10991 | BD821_10989 | GCA_000703125_02300 | GCA_000703125_02298 | Unannotated protein. | Unannotated protein. | 0.906 |
BD821_10991 | BD821_11183 | GCA_000703125_02300 | GCA_000703125_00223 | Unannotated protein. | Unannotated protein. | 0.840 |
BD821_10991 | BD821_11560 | GCA_000703125_02300 | GCA_000703125_01009 | Unannotated protein. | Unannotated protein. | 0.753 |
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