node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BD821_101336 | BD821_11112 | GCA_000703125_02615 | GCA_000703125_00154 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein. | 0.703 |
BD821_101336 | hfq | GCA_000703125_02615 | GCA_000703125_02373 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.593 |
BD821_101336 | miaA | GCA_000703125_02615 | GCA_000703125_02374 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.595 |
BD821_101336 | miaB | GCA_000703125_02615 | GCA_000703125_02377 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.686 |
BD821_101336 | mnmA | GCA_000703125_02615 | GCA_000703125_00263 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.544 |
BD821_101336 | mutL | GCA_000703125_02615 | GCA_000703125_02375 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.657 |
BD821_101336 | rlmN | GCA_000703125_02615 | GCA_000703125_02614 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. | 0.996 |
BD821_101336 | rph | GCA_000703125_02615 | GCA_000703125_00346 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.856 |
BD821_101336 | thiI | GCA_000703125_02615 | GCA_000703125_00257 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.938 |
BD821_11112 | BD821_101336 | GCA_000703125_00154 | GCA_000703125_02615 | Unannotated protein. | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.703 |
BD821_11112 | hfq | GCA_000703125_00154 | GCA_000703125_02373 | Unannotated protein. | Unannotated protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.464 |
BD821_11112 | miaB | GCA_000703125_00154 | GCA_000703125_02377 | Unannotated protein. | Unannotated protein; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.705 |
BD821_11112 | rph | GCA_000703125_00154 | GCA_000703125_00346 | Unannotated protein. | Unannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.421 |
hfq | BD821_101336 | GCA_000703125_02373 | GCA_000703125_02615 | Unannotated protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.593 |
hfq | BD821_11112 | GCA_000703125_02373 | GCA_000703125_00154 | Unannotated protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Unannotated protein. | 0.464 |
hfq | miaA | GCA_000703125_02373 | GCA_000703125_02374 | Unannotated protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Unannotated protein; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.902 |
hfq | miaB | GCA_000703125_02373 | GCA_000703125_02377 | Unannotated protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Unannotated protein; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.586 |
hfq | mutL | GCA_000703125_02373 | GCA_000703125_02375 | Unannotated protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Unannotated protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.722 |
hfq | mutS | GCA_000703125_02373 | GCA_000703125_02376 | Unannotated protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Unannotated protein; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.619 |
miaA | BD821_101336 | GCA_000703125_02374 | GCA_000703125_02615 | Unannotated protein; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.595 |