STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rncUnannotated protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (234 aa)    
Predicted Functional Partners:
rpsP
Unannotated protein; Belongs to the bacterial ribosomal protein bS16 family.
 
 
 0.964
rpmF
Unannotated protein; Belongs to the bacterial ribosomal protein bL32 family.
  
   0.961
rplS
Unannotated protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
 
 
 0.960
rpsF
Unannotated protein; Binds together with S18 to 16S ribosomal RNA.
   
 
 0.939
rpsI
Unannotated protein; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.932
rpmA
Unannotated protein; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.930
prfB
Unannotated protein; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
  
 
 0.928
rplT
Unannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.928
rpsO
Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
 
 0.928
acpP-2
Unannotated protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.928
Your Current Organism:
Clostridium algidicarnis
NCBI taxonomy Id: 37659
Other names: C. algidicarnis, DSM 15099, NCFB 2931, NCIMB 702931
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.