STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAG73977.1DNA uptake protein. (728 aa)    
Predicted Functional Partners:
OAG73984.1
DNA processing protein DprA.
 
  
 0.897
OAG72698.1
Competence protein F.
 
  
 0.836
OAG72722.1
Competence protein ComM.
 
  
 0.716
OAG73978.1
Oxidoreductase.
       0.610
OAG72610.1
DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.608
pheT
phenylalanine--tRNA ligase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
   
 0.586
OAG73563.1
Peptidyl-prolyl cis-trans isomerase.
  
     0.574
OAG73864.1
PAS domain-containing two-component system sensor histidine kinase/response regulator.
  
    0.568
OAG73979.1
Cupin.
 
     0.527
OAG73240.1
Protein RecA.
  
  
 0.489
Your Current Organism:
Gluconobacter japonicus
NCBI taxonomy Id: 376620
Other names: BCC 14458, BCC 36733 [[Gluconobacter nephelii]], G. japonicus, Gluconobacter japonicus Malimas et al. 2009 emend. Li et al. 2017, Gluconobacter nephelii, Gluconobacter nephelii Kommanee et al. 2011, LMG 26773 [[Gluconobacter nephelii]], LMG:26773 [[Gluconobacter nephelii]], NBRC 106061 [[Gluconobacter nephelii]], NBRC 3271, PCU 318 [[Gluconobacter nephelii]], PCU:318 [[Gluconobacter nephelii]], strain 7, K. Kondo, strain RBY-1 [[Gluconobacter nephelii]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.