Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OAG72556.1 | OAG72557.1 | A0J51_02302 | A0J51_02303 | LPS biosynthesis protein. | Integration host factor. | 0.514 |
OAG72557.1 | OAG72556.1 | A0J51_02303 | A0J51_02302 | Integration host factor. | LPS biosynthesis protein. | 0.514 |
OAG72557.1 | OAG72653.1 | A0J51_02303 | A0J51_02098 | Integration host factor. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | 0.418 |
OAG72557.1 | OAG72742.1 | A0J51_02303 | A0J51_02190 | Integration host factor. | Histone-like DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | 0.487 |
OAG72557.1 | OAG72789.1 | A0J51_02303 | A0J51_02239 | Integration host factor. | Integration host factor DNA-binding subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.421 |
OAG72557.1 | OAG73985.1 | A0J51_02303 | A0J51_00864 | Integration host factor. | DNA topoisomerase I. | 0.487 |
OAG72557.1 | fliM | A0J51_02303 | A0J51_00453 | Integration host factor. | Flagellar motor switch protein FliM. | 0.402 |
OAG72557.1 | mscL | A0J51_02303 | A0J51_02061 | Integration host factor. | Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell. | 0.407 |
OAG72557.1 | nusA | A0J51_02303 | A0J51_01804 | Integration host factor. | Hypothetical protein; Participates in both transcription termination and antitermination. | 0.419 |
OAG72557.1 | polA | A0J51_02303 | A0J51_01504 | Integration host factor. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.481 |
OAG72557.1 | rpsT | A0J51_02303 | A0J51_02097 | Integration host factor. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.472 |
OAG72653.1 | OAG72557.1 | A0J51_02098 | A0J51_02303 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | Integration host factor. | 0.418 |
OAG72653.1 | OAG72742.1 | A0J51_02098 | A0J51_02190 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | Histone-like DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | 0.640 |
OAG72653.1 | OAG73985.1 | A0J51_02098 | A0J51_00864 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | DNA topoisomerase I. | 0.521 |
OAG72653.1 | polA | A0J51_02098 | A0J51_01504 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.559 |
OAG72653.1 | rpsT | A0J51_02098 | A0J51_02097 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.560 |
OAG72742.1 | OAG72557.1 | A0J51_02190 | A0J51_02303 | Histone-like DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | Integration host factor. | 0.487 |
OAG72742.1 | OAG72653.1 | A0J51_02190 | A0J51_02098 | Histone-like DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | 0.640 |
OAG72742.1 | OAG73985.1 | A0J51_02190 | A0J51_00864 | Histone-like DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | DNA topoisomerase I. | 0.487 |
OAG72742.1 | fliM | A0J51_02190 | A0J51_00453 | Histone-like DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | Flagellar motor switch protein FliM. | 0.402 |
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