STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fjoh_0132Hypothetical protein. (238 aa)    
Predicted Functional Partners:
Fjoh_0133
Hypothetical protein.
 
     0.860
Fjoh_0556
PFAM: Uroporphyrinogen III synthase HEM4.
  
     0.766
Fjoh_0648
PFAM: protein of unknown function DUF177.
  
     0.766
Fjoh_0142
Hypothetical protein.
  
     0.759
Fjoh_2533
Hypothetical protein.
  
     0.757
Fjoh_2199
Hypothetical protein.
  
     0.750
Fjoh_4922
Hypothetical protein.
  
     0.748
Fjoh_3499
PFAM: DoxX family protein.
  
     0.740
Fjoh_0012
PFAM: Septum formation initiator.
 
     0.735
Fjoh_2737
Hypothetical protein.
  
     0.730
Your Current Organism:
Flavobacterium johnsoniae
NCBI taxonomy Id: 376686
Other names: F. johnsoniae UW101, Flavobacterium johnsoniae ATCC 17061, Flavobacterium johnsoniae DSM 2064, Flavobacterium johnsoniae IAM 14304, Flavobacterium johnsoniae IFO 14942, Flavobacterium johnsoniae MYX.1.1.1, Flavobacterium johnsoniae NBRC 14942, Flavobacterium johnsoniae NCIB 11054, Flavobacterium johnsoniae UW101, Flavobacterium johnsoniae str. UW101, Flavobacterium johnsoniae strain UW101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.