STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fjoh_0578PFAM: sodium/hydrogen exchanger. (756 aa)    
Predicted Functional Partners:
Fjoh_0580
Signal transduction histidine kinase, LytS.
 
     0.828
Fjoh_0579
PFAM: response regulator receiver.
 
     0.599
Fjoh_0577
PFAM: Ankyrin.
       0.556
Fjoh_5016
PFAM: TrkA-C domain protein; sodium/hydrogen exchanger.
 
   
0.491
Fjoh_4402
PFAM: CBS domain containing protein; Cl- channel, voltage-gated family protein.
 
   
 0.422
Fjoh_4532
PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase.
  
 
 0.420
Fjoh_4617
PFAM: NAD(P)H dehydrogenase (quinone).
  
 
 0.420
Fjoh_1970
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
     0.407
Your Current Organism:
Flavobacterium johnsoniae
NCBI taxonomy Id: 376686
Other names: F. johnsoniae UW101, Flavobacterium johnsoniae ATCC 17061, Flavobacterium johnsoniae DSM 2064, Flavobacterium johnsoniae IAM 14304, Flavobacterium johnsoniae IFO 14942, Flavobacterium johnsoniae MYX.1.1.1, Flavobacterium johnsoniae NBRC 14942, Flavobacterium johnsoniae NCIB 11054, Flavobacterium johnsoniae UW101, Flavobacterium johnsoniae str. UW101, Flavobacterium johnsoniae strain UW101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.