STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fjoh_1273Predicted lipoprotein. (329 aa)    
Predicted Functional Partners:
Fjoh_1272
Hypothetical protein.
 
    0.901
Fjoh_1276
Hypothetical protein.
 
  
 0.888
Fjoh_1271
Uncharacterized protein.
 
     0.868
Fjoh_1275
ECF subfamily RNA polymerase sigma-24 subunit; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.868
Fjoh_1274
Hypothetical protein.
       0.559
Fjoh_3297
Hypothetical protein.
  
    0.553
Fjoh_4176
Beta-1,3-glucanase-like protein; Related to beta-1,3-glucanases; Glycoside hydrolase family 64; CBM13 module; CBM6 module; D5 module.
  
     0.475
Fjoh_0599
PFAM: outer membrane chaperone Skp (OmpH).
 
 
 0.436
Fjoh_1083
Hypothetical protein.
  
   0.430
Fjoh_2352
Peptidase family S9-like protein; Classified as 'non-peptidase homologue' by MEROPS; may not have peptidase activity; predicted lipoprotein; Fibronectin type III domain.
  
 
 0.423
Your Current Organism:
Flavobacterium johnsoniae
NCBI taxonomy Id: 376686
Other names: F. johnsoniae UW101, Flavobacterium johnsoniae ATCC 17061, Flavobacterium johnsoniae DSM 2064, Flavobacterium johnsoniae IAM 14304, Flavobacterium johnsoniae IFO 14942, Flavobacterium johnsoniae MYX.1.1.1, Flavobacterium johnsoniae NBRC 14942, Flavobacterium johnsoniae NCIB 11054, Flavobacterium johnsoniae UW101, Flavobacterium johnsoniae str. UW101, Flavobacterium johnsoniae strain UW101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.