Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Fjoh_1369 | Fjoh_1431 | Fjoh_1369 | Fjoh_1431 | Hypothetical protein. | DNA/RNA non-specific endonuclease; Predicted lipoprotein. | 0.570 |
Fjoh_1430 | Fjoh_1431 | Fjoh_1430 | Fjoh_1431 | Carboxyl-terminal processing peptidase-1; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; Belongs to the peptidase S41A family. | DNA/RNA non-specific endonuclease; Predicted lipoprotein. | 0.581 |
Fjoh_1431 | Fjoh_1369 | Fjoh_1431 | Fjoh_1369 | DNA/RNA non-specific endonuclease; Predicted lipoprotein. | Hypothetical protein. | 0.570 |
Fjoh_1431 | Fjoh_1430 | Fjoh_1431 | Fjoh_1430 | DNA/RNA non-specific endonuclease; Predicted lipoprotein. | Carboxyl-terminal processing peptidase-1; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; Belongs to the peptidase S41A family. | 0.581 |
Fjoh_1431 | nuoF | Fjoh_1431 | Fjoh_1241 | DNA/RNA non-specific endonuclease; Predicted lipoprotein. | NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. | 0.702 |
Fjoh_1431 | polA | Fjoh_1431 | Fjoh_1617 | DNA/RNA non-specific endonuclease; Predicted lipoprotein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.559 |
Fjoh_1431 | rnz | Fjoh_1431 | Fjoh_4543 | DNA/RNA non-specific endonuclease; Predicted lipoprotein. | Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. | 0.923 |
nuoF | Fjoh_1431 | Fjoh_1241 | Fjoh_1431 | NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. | DNA/RNA non-specific endonuclease; Predicted lipoprotein. | 0.702 |
polA | Fjoh_1431 | Fjoh_1617 | Fjoh_1431 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | DNA/RNA non-specific endonuclease; Predicted lipoprotein. | 0.559 |
rnz | Fjoh_1431 | Fjoh_4543 | Fjoh_1431 | Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. | DNA/RNA non-specific endonuclease; Predicted lipoprotein. | 0.923 |