Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Fjoh_0548 | Fjoh_2075 | Hypothetical protein. | Putative phage repressor; PFAM: peptidase S24, S26A and S26B; Belongs to the peptidase S24 family. | 0.479 |
Fjoh_0548 | Fjoh_2463 | Hypothetical protein. | Hypothetical protein. | 0.852 |
Fjoh_2075 | Fjoh_0548 | Putative phage repressor; PFAM: peptidase S24, S26A and S26B; Belongs to the peptidase S24 family. | Hypothetical protein. | 0.479 |
Fjoh_2075 | Fjoh_2076 | Putative phage repressor; PFAM: peptidase S24, S26A and S26B; Belongs to the peptidase S24 family. | Histidine kinase; PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; ATP-binding region, ATPase domain protein; histidine kinase A domain protein; Two component regulator propeller; Two component regulator three Y domain protein. | 0.419 |
Fjoh_2075 | Fjoh_2463 | Putative phage repressor; PFAM: peptidase S24, S26A and S26B; Belongs to the peptidase S24 family. | Hypothetical protein. | 0.404 |
Fjoh_2076 | Fjoh_2075 | Histidine kinase; PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; ATP-binding region, ATPase domain protein; histidine kinase A domain protein; Two component regulator propeller; Two component regulator three Y domain protein. | Putative phage repressor; PFAM: peptidase S24, S26A and S26B; Belongs to the peptidase S24 family. | 0.419 |
Fjoh_2463 | Fjoh_0548 | Hypothetical protein. | Hypothetical protein. | 0.852 |
Fjoh_2463 | Fjoh_2075 | Hypothetical protein. | Putative phage repressor; PFAM: peptidase S24, S26A and S26B; Belongs to the peptidase S24 family. | 0.404 |