Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 annotation | node2 annotation | score |
| Fjoh_3169 | Fjoh_3170 | Hypothetical protein; Alpha-ketoglutarate-dependent dioxygenase that in vitro catalyzes the regio- and stereoselective hydroxylation of L-lysine, leading to (4R)-4-hydroxy-L-lysine. To a lesser extent, can also use (3S)-3-hydroxy-L-lysine as substrate, producing the dihydroxylated product (3R,4R)-3,4-hydroxy-L-lysine. Cannot use D-lysine or L- ornithine as substrate; Belongs to the clavaminate synthase family. | PFAM: nitroreductase. | 0.540 |
| Fjoh_3169 | Fjoh_3171 | Hypothetical protein; Alpha-ketoglutarate-dependent dioxygenase that in vitro catalyzes the regio- and stereoselective hydroxylation of L-lysine, leading to (4R)-4-hydroxy-L-lysine. To a lesser extent, can also use (3S)-3-hydroxy-L-lysine as substrate, producing the dihydroxylated product (3R,4R)-3,4-hydroxy-L-lysine. Cannot use D-lysine or L- ornithine as substrate; Belongs to the clavaminate synthase family. | PFAM: Pyridoxal-dependent decarboxylase. | 0.753 |
| Fjoh_3169 | Fjoh_3172 | Hypothetical protein; Alpha-ketoglutarate-dependent dioxygenase that in vitro catalyzes the regio- and stereoselective hydroxylation of L-lysine, leading to (4R)-4-hydroxy-L-lysine. To a lesser extent, can also use (3S)-3-hydroxy-L-lysine as substrate, producing the dihydroxylated product (3R,4R)-3,4-hydroxy-L-lysine. Cannot use D-lysine or L- ornithine as substrate; Belongs to the clavaminate synthase family. | Similar to aerobactin siderophore synthetase protein; IucA/IucC family protein. | 0.848 |
| Fjoh_3169 | Fjoh_3173 | Hypothetical protein; Alpha-ketoglutarate-dependent dioxygenase that in vitro catalyzes the regio- and stereoselective hydroxylation of L-lysine, leading to (4R)-4-hydroxy-L-lysine. To a lesser extent, can also use (3S)-3-hydroxy-L-lysine as substrate, producing the dihydroxylated product (3R,4R)-3,4-hydroxy-L-lysine. Cannot use D-lysine or L- ornithine as substrate; Belongs to the clavaminate synthase family. | Similar to protein involved in aerobactin siderophore synthesis; L-lysine 6-monooxygenase (NADPH). | 0.692 |
| Fjoh_3169 | Fjoh_3174 | Hypothetical protein; Alpha-ketoglutarate-dependent dioxygenase that in vitro catalyzes the regio- and stereoselective hydroxylation of L-lysine, leading to (4R)-4-hydroxy-L-lysine. To a lesser extent, can also use (3S)-3-hydroxy-L-lysine as substrate, producing the dihydroxylated product (3R,4R)-3,4-hydroxy-L-lysine. Cannot use D-lysine or L- ornithine as substrate; Belongs to the clavaminate synthase family. | Similar to aerobactin siderophore synthetase protein; IucA/IucC family protein. | 0.777 |
| Fjoh_3169 | Fjoh_3175 | Hypothetical protein; Alpha-ketoglutarate-dependent dioxygenase that in vitro catalyzes the regio- and stereoselective hydroxylation of L-lysine, leading to (4R)-4-hydroxy-L-lysine. To a lesser extent, can also use (3S)-3-hydroxy-L-lysine as substrate, producing the dihydroxylated product (3R,4R)-3,4-hydroxy-L-lysine. Cannot use D-lysine or L- ornithine as substrate; Belongs to the clavaminate synthase family. | TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE. | 0.523 |
| Fjoh_3169 | Fjoh_3176 | Hypothetical protein; Alpha-ketoglutarate-dependent dioxygenase that in vitro catalyzes the regio- and stereoselective hydroxylation of L-lysine, leading to (4R)-4-hydroxy-L-lysine. To a lesser extent, can also use (3S)-3-hydroxy-L-lysine as substrate, producing the dihydroxylated product (3R,4R)-3,4-hydroxy-L-lysine. Cannot use D-lysine or L- ornithine as substrate; Belongs to the clavaminate synthase family. | Hypothetical protein. | 0.843 |
| Fjoh_3169 | Fjoh_3177 | Hypothetical protein; Alpha-ketoglutarate-dependent dioxygenase that in vitro catalyzes the regio- and stereoselective hydroxylation of L-lysine, leading to (4R)-4-hydroxy-L-lysine. To a lesser extent, can also use (3S)-3-hydroxy-L-lysine as substrate, producing the dihydroxylated product (3R,4R)-3,4-hydroxy-L-lysine. Cannot use D-lysine or L- ornithine as substrate; Belongs to the clavaminate synthase family. | PFAM: AMP-dependent synthetase and ligase. | 0.857 |
| Fjoh_3170 | Fjoh_3169 | PFAM: nitroreductase. | Hypothetical protein; Alpha-ketoglutarate-dependent dioxygenase that in vitro catalyzes the regio- and stereoselective hydroxylation of L-lysine, leading to (4R)-4-hydroxy-L-lysine. To a lesser extent, can also use (3S)-3-hydroxy-L-lysine as substrate, producing the dihydroxylated product (3R,4R)-3,4-hydroxy-L-lysine. Cannot use D-lysine or L- ornithine as substrate; Belongs to the clavaminate synthase family. | 0.540 |
| Fjoh_3170 | Fjoh_3171 | PFAM: nitroreductase. | PFAM: Pyridoxal-dependent decarboxylase. | 0.709 |
| Fjoh_3170 | Fjoh_3172 | PFAM: nitroreductase. | Similar to aerobactin siderophore synthetase protein; IucA/IucC family protein. | 0.765 |
| Fjoh_3170 | Fjoh_3173 | PFAM: nitroreductase. | Similar to protein involved in aerobactin siderophore synthesis; L-lysine 6-monooxygenase (NADPH). | 0.709 |
| Fjoh_3170 | Fjoh_3174 | PFAM: nitroreductase. | Similar to aerobactin siderophore synthetase protein; IucA/IucC family protein. | 0.732 |
| Fjoh_3170 | Fjoh_3175 | PFAM: nitroreductase. | TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE. | 0.680 |
| Fjoh_3170 | Fjoh_3176 | PFAM: nitroreductase. | Hypothetical protein. | 0.580 |
| Fjoh_3170 | Fjoh_3177 | PFAM: nitroreductase. | PFAM: AMP-dependent synthetase and ligase. | 0.710 |
| Fjoh_3170 | Fjoh_3178 | PFAM: nitroreductase. | Hypothetical protein. | 0.432 |
| Fjoh_3171 | Fjoh_3169 | PFAM: Pyridoxal-dependent decarboxylase. | Hypothetical protein; Alpha-ketoglutarate-dependent dioxygenase that in vitro catalyzes the regio- and stereoselective hydroxylation of L-lysine, leading to (4R)-4-hydroxy-L-lysine. To a lesser extent, can also use (3S)-3-hydroxy-L-lysine as substrate, producing the dihydroxylated product (3R,4R)-3,4-hydroxy-L-lysine. Cannot use D-lysine or L- ornithine as substrate; Belongs to the clavaminate synthase family. | 0.753 |
| Fjoh_3171 | Fjoh_3170 | PFAM: Pyridoxal-dependent decarboxylase. | PFAM: nitroreductase. | 0.709 |
| Fjoh_3171 | Fjoh_3172 | PFAM: Pyridoxal-dependent decarboxylase. | Similar to aerobactin siderophore synthetase protein; IucA/IucC family protein. | 0.948 |
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