Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Fjoh_3206Hypothetical protein. (150 aa)    
Predicted Functional Partners:
sprD
SprD; Protein involved ingliding motility.
  
     0.774
sprC
SprC; Protein involved in gliding motility.
  
     0.774
Fjoh_0983
Hypothetical protein.
  
     0.773
Fjoh_3194
Hypothetical protein.
  
     0.772
Fjoh_1863
Hypothetical protein.
  
     0.764
Fjoh_1864
Hypothetical protein.
  
     0.763
Fjoh_0978
Hypothetical protein.
  
     0.753
Fjoh_4889
Hypothetical protein.
  
     0.718
Fjoh_3818
Hypothetical protein.
  
     0.679
Fjoh_3108
Hypothetical protein.
  
     0.677
Your Current Organism:
Flavobacterium johnsoniae
NCBI taxonomy Id: 376686
Other names: F. johnsoniae UW101, Flavobacterium johnsoniae ATCC 17061, Flavobacterium johnsoniae DSM 2064, Flavobacterium johnsoniae IAM 14304, Flavobacterium johnsoniae IFO 14942, Flavobacterium johnsoniae MYX.1.1.1, Flavobacterium johnsoniae NBRC 14942, Flavobacterium johnsoniae NCIB 11054, Flavobacterium johnsoniae UW101, Flavobacterium johnsoniae str. UW101, Flavobacterium johnsoniae strain UW101
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