Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Fjoh_0652 | Fjoh_3241 | Fjoh_0652 | Fjoh_3241 | TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase. | Nucleoside phosphorylase-like protein. | 0.902 |
Fjoh_0652 | Fjoh_3546 | Fjoh_0652 | Fjoh_3546 | TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase. | Hypothetical protein. | 0.900 |
Fjoh_0652 | ahcY | Fjoh_0652 | Fjoh_1579 | TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase. | Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | 0.905 |
Fjoh_0652 | metK | Fjoh_0652 | Fjoh_1489 | TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase. | Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.920 |
Fjoh_2801 | Fjoh_3241 | Fjoh_2801 | Fjoh_3241 | PFAM: Spermine synthase. | Nucleoside phosphorylase-like protein. | 0.903 |
Fjoh_2801 | guaA | Fjoh_2801 | Fjoh_2377 | PFAM: Spermine synthase. | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | 0.519 |
Fjoh_2801 | metK | Fjoh_2801 | Fjoh_1489 | PFAM: Spermine synthase. | Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.427 |
Fjoh_3241 | Fjoh_0652 | Fjoh_3241 | Fjoh_0652 | Nucleoside phosphorylase-like protein. | TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase. | 0.902 |
Fjoh_3241 | Fjoh_2801 | Fjoh_3241 | Fjoh_2801 | Nucleoside phosphorylase-like protein. | PFAM: Spermine synthase. | 0.903 |
Fjoh_3241 | Fjoh_3242 | Fjoh_3241 | Fjoh_3242 | Nucleoside phosphorylase-like protein. | Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type. | 0.476 |
Fjoh_3241 | Fjoh_3546 | Fjoh_3241 | Fjoh_3546 | Nucleoside phosphorylase-like protein. | Hypothetical protein. | 0.902 |
Fjoh_3241 | Fjoh_4205 | Fjoh_3241 | Fjoh_4205 | Nucleoside phosphorylase-like protein. | Alanine dehydrogenase; PFAM: protein of unknown function DUF182. | 0.499 |
Fjoh_3241 | ahcY | Fjoh_3241 | Fjoh_1579 | Nucleoside phosphorylase-like protein. | Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | 0.922 |
Fjoh_3241 | guaA | Fjoh_3241 | Fjoh_2377 | Nucleoside phosphorylase-like protein. | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | 0.529 |
Fjoh_3241 | metG | Fjoh_3241 | Fjoh_0857 | Nucleoside phosphorylase-like protein. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.453 |
Fjoh_3241 | metK | Fjoh_3241 | Fjoh_1489 | Nucleoside phosphorylase-like protein. | Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.465 |
Fjoh_3241 | surE | Fjoh_3241 | Fjoh_1429 | Nucleoside phosphorylase-like protein. | Stationary-phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.508 |
Fjoh_3242 | Fjoh_3241 | Fjoh_3242 | Fjoh_3241 | Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type. | Nucleoside phosphorylase-like protein. | 0.476 |
Fjoh_3546 | Fjoh_0652 | Fjoh_3546 | Fjoh_0652 | Hypothetical protein. | TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase. | 0.900 |
Fjoh_3546 | Fjoh_3241 | Fjoh_3546 | Fjoh_3241 | Hypothetical protein. | Nucleoside phosphorylase-like protein. | 0.902 |
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