STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fjoh_3971TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11. (3602 aa)    
Predicted Functional Partners:
Fjoh_3972
Hypothetical protein.
 
     0.772
Fjoh_3973
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller.
 
 
   0.761
Fjoh_3553
PFAM: TPR repeat-containing protein; SMART: helix-turn-helix- domain containing protein, AraC type; Tetratricopeptide domain protein.
  
     0.448
Fjoh_4364
PFAM: helix-turn-helix- domain containing protein, AraC type; SMART: Tetratricopeptide domain protein.
  
     0.440
Fjoh_3028
Response regulator receiver protein; PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: helix-turn-helix- domain containing protein, AraC type.
  
     0.436
Fjoh_3970
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.425
Fjoh_3974
TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase.
       0.419
Fjoh_0252
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
 
   0.412
Fjoh_1277
Peptidase family S41-like protein; Classified as 'non-peptidase homologue' by MEROPS; may not have peptidase activity.
  
   0.410
Your Current Organism:
Flavobacterium johnsoniae
NCBI taxonomy Id: 376686
Other names: F. johnsoniae UW101, Flavobacterium johnsoniae ATCC 17061, Flavobacterium johnsoniae DSM 2064, Flavobacterium johnsoniae IAM 14304, Flavobacterium johnsoniae IFO 14942, Flavobacterium johnsoniae MYX.1.1.1, Flavobacterium johnsoniae NBRC 14942, Flavobacterium johnsoniae NCIB 11054, Flavobacterium johnsoniae UW101, Flavobacterium johnsoniae str. UW101, Flavobacterium johnsoniae strain UW101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.