STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fjoh_4246Candidate acetylxylan esterase; PFAM: lipolytic enzyme, G-D-S-L family. (218 aa)    
Predicted Functional Partners:
Fjoh_4247
Candidate polygalacturonase; PFAM: glycoside hydrolase, family 28; Belongs to the glycosyl hydrolase 28 family.
   0.971
Fjoh_4115
Polygalacturonase-like protein; Related to polygalacturonases; Belongs to the glycosyl hydrolase 28 family.
   0.967
Fjoh_4096
Candidate pectin methylesterase; PFAM: Pectinesterase.
   
 0.955
Fjoh_4088
Polygalacturonase-like protein; Related to polygalacturonases; Belongs to the glycosyl hydrolase 28 family.
   0.950
Fjoh_4222
Candidate rhamnogalacturonan lyase; PFAM: FG-GAP repeat protein.
 
 0.939
Fjoh_4248
Candidate bifunctional pectin methylesterase/pectate lyase; TIGRFAM: pectate lyase; PFAM: Pectinesterase.
   
 0.893
Fjoh_4256
Candidate polygalacturonase; Predicted lipoprotein; Belongs to the glycosyl hydrolase 28 family.
   0.887
Fjoh_4249
Candidate beta-xylosidase/alpha-L-arabinofuranosidase; PFAM: glycoside hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family.
 
     0.850
Fjoh_4250
Candidate d-4,5-unsaturated beta-glycuronidase; Predicted lipoprotein.
     0.836
Fjoh_4251
Candidate d-4,5-unsaturated beta-glycuronidase; PFAM: glycosyl hydrolase, family 88.
     0.830
Your Current Organism:
Flavobacterium johnsoniae
NCBI taxonomy Id: 376686
Other names: F. johnsoniae UW101, Flavobacterium johnsoniae ATCC 17061, Flavobacterium johnsoniae DSM 2064, Flavobacterium johnsoniae IAM 14304, Flavobacterium johnsoniae IFO 14942, Flavobacterium johnsoniae MYX.1.1.1, Flavobacterium johnsoniae NBRC 14942, Flavobacterium johnsoniae NCIB 11054, Flavobacterium johnsoniae UW101, Flavobacterium johnsoniae str. UW101, Flavobacterium johnsoniae strain UW101
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