STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS43392.1TonB-linked outer membrane protein, SusC/RagA family. (1160 aa)    
Predicted Functional Partners:
SFS43413.1
Starch-binding associating with outer membrane.
 
   0.957
SFS85319.1
Starch-binding associating with outer membrane.
 
 
   0.857
SFS66149.1
Starch-binding associating with outer membrane.
 
 
   0.854
SFS99449.1
Starch-binding associating with outer membrane.
  
 
   0.852
SFT14844.1
Starch-binding associating with outer membrane.
 
 
   0.850
SFT08238.1
Starch-binding associating with outer membrane.
 
 
   0.848
SFS33012.1
Starch-binding associating with outer membrane.
  
 
   0.847
SFT11315.1
Starch-binding associating with outer membrane.
  
 
   0.844
SFS87769.1
Starch-binding associating with outer membrane.
 
 
   0.830
SFT08052.1
Starch-binding associating with outer membrane.
  
 
   0.827
Your Current Organism:
Zhouia amylolytica
NCBI taxonomy Id: 376730
Other names: CGMCC 1.6114, Flavobacteriaceae bacterium HN-171, Flavobacteriaceae bacterium HN-172, Flavobacteriaceae bacterium HN-181, JCM 14016, Z. amylolytica, Zhouia amylolytica Liu et al. 2006, strain HN-171
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