STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS53417.1Tetratricopeptide repeat-containing protein. (616 aa)    
Predicted Functional Partners:
SFS53442.1
Two component transcriptional regulator, LytTR family.
 
   0.956
SFS53515.1
Peptidase family M48.
 
     0.825
SFS73134.1
Two component transcriptional regulator, LytTR family.
 
   0.805
SFS72876.1
Two component transcriptional regulator, LytTR family.
 
   0.799
SFS41652.1
Two component transcriptional regulator, LytTR family.
  
   0.798
SFT02768.1
Two component transcriptional regulator, LytTR family.
  
   0.787
SFT15347.1
Two component transcriptional regulator, LytTR family.
  
   0.787
SFS53306.1
Two component transcriptional regulator, LytTR family.
  
   0.785
SFS51017.1
Two component transcriptional regulator, LytTR family.
  
   0.777
SFS43770.1
Two component transcriptional regulator, LytTR family.
  
   0.768
Your Current Organism:
Zhouia amylolytica
NCBI taxonomy Id: 376730
Other names: CGMCC 1.6114, Flavobacteriaceae bacterium HN-171, Flavobacteriaceae bacterium HN-172, Flavobacteriaceae bacterium HN-181, JCM 14016, Z. amylolytica, Zhouia amylolytica Liu et al. 2006, strain HN-171
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.