STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS64978.1FecR family protein. (405 aa)    
Predicted Functional Partners:
SFS64954.1
RNA polymerase sigma-70 factor, ECF subfamily; Non-canonical start codon; manually curated; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.870
SFS64998.1
TonB-linked outer membrane protein, SusC/RagA family.
 
    0.818
SFS65018.1
SusD family protein.
 
     0.807
SFS87738.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.764
SFS67971.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.712
SFS95094.1
FecR family protein.
  
  
 
0.700
SFS71742.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.637
SFT12772.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.635
SFT08016.1
FecR family protein.
  
  
 
0.578
SFS54364.1
FecR family protein.
  
  
 
0.575
Your Current Organism:
Zhouia amylolytica
NCBI taxonomy Id: 376730
Other names: CGMCC 1.6114, Flavobacteriaceae bacterium HN-171, Flavobacteriaceae bacterium HN-172, Flavobacteriaceae bacterium HN-181, JCM 14016, Z. amylolytica, Zhouia amylolytica Liu et al. 2006, strain HN-171
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.