Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFS42316.1 | SFS56775.1 | SAMN04487906_0417 | SAMN04487906_0933 | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | Glyceraldehyde-3-phosphate dehydrogenase (NADP+). | 0.677 |
SFS42316.1 | SFS66820.1 | SAMN04487906_0417 | SAMN04487906_1228 | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | Delta-1-pyrroline-5-carboxylate dehydrogenase. | 0.677 |
SFS42316.1 | SFS68299.1 | SAMN04487906_0417 | SAMN04487906_1344 | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | phenylacetate-CoA ligase. | 0.794 |
SFS55053.1 | SFS68299.1 | SAMN04487906_0812 | SAMN04487906_1344 | Capsular exopolysaccharide family. | phenylacetate-CoA ligase. | 0.635 |
SFS55053.1 | SFT14288.1 | SAMN04487906_0812 | SAMN04487906_3187 | Capsular exopolysaccharide family. | Capsular exopolysaccharide family. | 0.802 |
SFS56775.1 | SFS42316.1 | SAMN04487906_0933 | SAMN04487906_0417 | Glyceraldehyde-3-phosphate dehydrogenase (NADP+). | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | 0.677 |
SFS56775.1 | SFS66820.1 | SAMN04487906_0933 | SAMN04487906_1228 | Glyceraldehyde-3-phosphate dehydrogenase (NADP+). | Delta-1-pyrroline-5-carboxylate dehydrogenase. | 0.554 |
SFS56775.1 | SFS68299.1 | SAMN04487906_0933 | SAMN04487906_1344 | Glyceraldehyde-3-phosphate dehydrogenase (NADP+). | phenylacetate-CoA ligase. | 0.447 |
SFS56775.1 | SFT06458.1 | SAMN04487906_0933 | SAMN04487906_2722 | Glyceraldehyde-3-phosphate dehydrogenase (NADP+). | Amidase. | 0.514 |
SFS66820.1 | SFS42316.1 | SAMN04487906_1228 | SAMN04487906_0417 | Delta-1-pyrroline-5-carboxylate dehydrogenase. | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | 0.677 |
SFS66820.1 | SFS56775.1 | SAMN04487906_1228 | SAMN04487906_0933 | Delta-1-pyrroline-5-carboxylate dehydrogenase. | Glyceraldehyde-3-phosphate dehydrogenase (NADP+). | 0.554 |
SFS66820.1 | SFS68299.1 | SAMN04487906_1228 | SAMN04487906_1344 | Delta-1-pyrroline-5-carboxylate dehydrogenase. | phenylacetate-CoA ligase. | 0.447 |
SFS68290.1 | SFS68299.1 | SAMN04487906_1343 | SAMN04487906_1344 | Hypothetical protein. | phenylacetate-CoA ligase. | 0.462 |
SFS68299.1 | SFS42316.1 | SAMN04487906_1344 | SAMN04487906_0417 | phenylacetate-CoA ligase. | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | 0.794 |
SFS68299.1 | SFS55053.1 | SAMN04487906_1344 | SAMN04487906_0812 | phenylacetate-CoA ligase. | Capsular exopolysaccharide family. | 0.635 |
SFS68299.1 | SFS56775.1 | SAMN04487906_1344 | SAMN04487906_0933 | phenylacetate-CoA ligase. | Glyceraldehyde-3-phosphate dehydrogenase (NADP+). | 0.447 |
SFS68299.1 | SFS66820.1 | SAMN04487906_1344 | SAMN04487906_1228 | phenylacetate-CoA ligase. | Delta-1-pyrroline-5-carboxylate dehydrogenase. | 0.447 |
SFS68299.1 | SFS68290.1 | SAMN04487906_1344 | SAMN04487906_1343 | phenylacetate-CoA ligase. | Hypothetical protein. | 0.462 |
SFS68299.1 | SFS68307.1 | SAMN04487906_1344 | SAMN04487906_1345 | phenylacetate-CoA ligase. | AraC-type DNA-binding protein. | 0.488 |
SFS68299.1 | SFT06458.1 | SAMN04487906_1344 | SAMN04487906_2722 | phenylacetate-CoA ligase. | Amidase. | 0.669 |
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