STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS68299.1phenylacetate-CoA ligase. (433 aa)    
Predicted Functional Partners:
SFS42316.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
 
 
 0.794
SFT14288.1
Capsular exopolysaccharide family.
 
  
  0.693
SFT06458.1
Amidase.
    
  0.669
SFS55053.1
Capsular exopolysaccharide family.
    
  0.635
SFT14096.1
Tyrosinase.
  
     0.635
SFT14130.1
Carbamoyl-phosphate synthase large subunit.
 
     0.566
SFS68307.1
AraC-type DNA-binding protein.
  
    0.488
SFS68290.1
Hypothetical protein.
       0.462
SFS56775.1
Glyceraldehyde-3-phosphate dehydrogenase (NADP+).
   
 0.447
SFS66820.1
Delta-1-pyrroline-5-carboxylate dehydrogenase.
   
 0.447
Your Current Organism:
Zhouia amylolytica
NCBI taxonomy Id: 376730
Other names: CGMCC 1.6114, Flavobacteriaceae bacterium HN-171, Flavobacteriaceae bacterium HN-172, Flavobacteriaceae bacterium HN-181, JCM 14016, Z. amylolytica, Zhouia amylolytica Liu et al. 2006, strain HN-171
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