Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFS77277.1Hypothetical protein. (111 aa)    
Predicted Functional Partners:
SFS77298.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
       0.802
SFS51088.1
LETM1-like protein.
  
     0.763
SFS36643.1
Hypothetical protein.
  
     0.748
SFS40851.1
Hypothetical protein.
  
     0.747
SFS95125.1
Hypothetical protein.
  
     0.740
SFS57036.1
Hypothetical protein.
  
     0.732
SFS38972.1
Hypothetical protein.
  
     0.725
SFS42652.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.723
SFT00578.1
Hypothetical protein.
  
     0.715
SFS95971.1
Anti-sigma-K factor rskA.
  
     0.712
Your Current Organism:
Zhouia amylolytica
NCBI taxonomy Id: 376730
Other names: CGMCC 1.6114, Flavobacteriaceae bacterium HN-171, Flavobacteriaceae bacterium HN-172, Flavobacteriaceae bacterium HN-181, JCM 14016, Z. amylolytica, Zhouia amylolytica Liu et al. 2006, strain HN-171
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