STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS85155.12-dehydro-3-deoxy-D-arabinonate dehydratase. (283 aa)    
Predicted Functional Partners:
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
  
 0.751
SFS85179.1
MFS transporter, FHS family, L-fucose permease.
       0.718
SFS87312.1
NADP-dependent aldehyde dehydrogenase.
 
 
 0.701
SFS85203.1
Hypothetical protein.
       0.677
SFS86175.1
N-acetylneuraminate lyase; Belongs to the DapA family.
    
  0.661
SFS87292.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
    
  0.661
SFS67877.1
Hypothetical protein.
  
     0.611
SFS85127.1
Transcriptional regulator, LacI family.
       0.588
SFS85224.1
Hypothetical protein.
       0.581
SFS82726.1
Hypothetical protein.
  
     0.526
Your Current Organism:
Zhouia amylolytica
NCBI taxonomy Id: 376730
Other names: CGMCC 1.6114, Flavobacteriaceae bacterium HN-171, Flavobacteriaceae bacterium HN-172, Flavobacteriaceae bacterium HN-181, JCM 14016, Z. amylolytica, Zhouia amylolytica Liu et al. 2006, strain HN-171
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