STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS91331.1AraC-type DNA-binding protein. (350 aa)    
Predicted Functional Partners:
SFS55929.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.799
SFT17069.1
Glutamate synthase (ferredoxin).
    
  0.659
SFT02708.1
AraC-like ligand binding domain-containing protein.
  
   0.609
SFS91318.1
ADP-ribose pyrophosphatase YjhB, NUDIX family.
 
     0.594
SFS91342.1
CubicO group peptidase, beta-lactamase class C family.
 
     0.562
SFS55943.1
Signal transduction histidine kinase.
   
 
 0.528
SFS55680.1
TolB amino-terminal domain-containing protein.
 
   0.527
SFS86061.1
AraC-type DNA-binding protein.
  
     0.498
SFT14355.1
AraC-type DNA-binding protein.
  
     0.493
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.463
Your Current Organism:
Zhouia amylolytica
NCBI taxonomy Id: 376730
Other names: CGMCC 1.6114, Flavobacteriaceae bacterium HN-171, Flavobacteriaceae bacterium HN-172, Flavobacteriaceae bacterium HN-181, JCM 14016, Z. amylolytica, Zhouia amylolytica Liu et al. 2006, strain HN-171
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