STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS95200.1Tetratricopeptide repeat-containing protein. (1006 aa)    
Predicted Functional Partners:
SFS95185.1
Hypothetical protein.
 
   
 0.932
SFT06878.1
LysM domain-containing protein.
 
  
  0.788
SFS53092.1
CarboxypepD_reg-like domain-containing protein.
  
     0.746
SFT17023.1
Hypothetical protein.
 
   
 0.729
SFS42244.1
Hypothetical protein.
 
  
 0.727
SFT17031.1
Biopolymer transport protein ExbD.
 
  
 0.720
SFS33337.1
Gliding motility-associated protein GldL.
  
     0.710
SFT13902.1
Hypothetical protein.
 
   
 0.703
SFS92439.1
Protein of unknown function.
  
     0.684
SFS75763.1
Putative DNA-binding domain-containing protein.
  
     0.663
Your Current Organism:
Zhouia amylolytica
NCBI taxonomy Id: 376730
Other names: CGMCC 1.6114, Flavobacteriaceae bacterium HN-171, Flavobacteriaceae bacterium HN-172, Flavobacteriaceae bacterium HN-181, JCM 14016, Z. amylolytica, Zhouia amylolytica Liu et al. 2006, strain HN-171
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.