STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT15689.1TonB-linked outer membrane protein, SusC/RagA family. (1028 aa)    
Predicted Functional Partners:
SFT15702.1
Starch-binding associating with outer membrane.
     0.952
SFT14547.1
Starch-binding associating with outer membrane.
     0.791
SFS72027.1
Starch-binding associating with outer membrane.
     0.769
SFT00117.1
Starch-binding associating with outer membrane.
     0.714
SFS94273.1
Starch-binding associating with outer membrane.
     0.702
SFS71816.1
Starch-binding associating with outer membrane.
 
     0.670
SFS36402.1
Susd and RagB outer membrane lipoprotein.
     0.668
SFS94334.1
Susd and RagB outer membrane lipoprotein.
     0.664
SFT11555.1
Protein TonB.
  
   0.633
SFS56082.1
Starch-binding associating with outer membrane.
     0.631
Your Current Organism:
Zhouia amylolytica
NCBI taxonomy Id: 376730
Other names: CGMCC 1.6114, Flavobacteriaceae bacterium HN-171, Flavobacteriaceae bacterium HN-172, Flavobacteriaceae bacterium HN-181, JCM 14016, Z. amylolytica, Zhouia amylolytica Liu et al. 2006, strain HN-171
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