STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT16502.1Peptidase family M23. (325 aa)    
Predicted Functional Partners:
SFT16512.1
DNA-binding transcriptional regulator, MerR family.
 
     0.808
SFS67961.1
Hypothetical protein.
  
   
 0.662
SFS42219.1
Protein CcmA, bactofilin family.
 
   
 0.629
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
    0.560
SFT16525.1
LemA protein.
       0.519
SFT16537.1
TLP18.3, Psb32 and MOLO-1 founding protein of phosphatase.
       0.512
SFT16547.1
Uncharacterized protein.
       0.512
SFS41178.1
Penicillin-binding protein 1A.
  
     0.481
SFT16472.1
GSCFA family protein.
  
    0.477
SFS75483.1
Membrane protein required for colicin V production.
 
     0.451
Your Current Organism:
Zhouia amylolytica
NCBI taxonomy Id: 376730
Other names: CGMCC 1.6114, Flavobacteriaceae bacterium HN-171, Flavobacteriaceae bacterium HN-172, Flavobacteriaceae bacterium HN-181, JCM 14016, Z. amylolytica, Zhouia amylolytica Liu et al. 2006, strain HN-171
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.