STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA49323.1TRAP transporter, DctM subunit. (430 aa)    
Predicted Functional Partners:
SFA49329.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.944
SFA49326.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.892
SFA49320.1
Gluconolactonase.
 
     0.808
SFA60402.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.778
SFA42410.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.754
SFA60407.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.754
SFA42495.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.753
SFA52893.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.748
SFA42323.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.736
SFA60806.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
     0.736
Your Current Organism:
Paracoccus halophilus
NCBI taxonomy Id: 376733
Other names: CGMCC 1.6117, JCM 14014, Paracoccus halophilus Liu et al. 2008, Paracoccus sp. HN-182, strain HN-182
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