STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA56623.1Tripartite ATP-independent transporter, DctM component. (103 aa)    
Predicted Functional Partners:
SFA56628.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.966
SFA60402.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.874
SFA60407.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.783
SFA52893.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.778
SFA37859.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.774
SFA42323.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.753
SFA61360.1
TRAP transporter, DctM subunit.
  
     0.749
SFA42334.1
TRAP transporter, DctM subunit.
  
     0.730
SFA52899.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.658
SFA56842.1
Phosphopantetheine attachment site.
    
  0.616
Your Current Organism:
Paracoccus halophilus
NCBI taxonomy Id: 376733
Other names: CGMCC 1.6117, JCM 14014, Paracoccus halophilus Liu et al. 2008, Paracoccus sp. HN-182, strain HN-182
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.