STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA58365.1Type IV secretory pathway, VirB3-like protein. (92 aa)    
Predicted Functional Partners:
SFA58362.1
Type IV secretion system protein VirB4.
  
 
 0.931
SFA58340.1
Type IV secretion system protein VirB8.
  
 
 0.900
SFA58344.1
TrbL/VirB6 plasmid conjugal transfer protein.
  
  
 0.876
SFA58369.1
Type IV secretory pathway, VirB2 components (pilins).
     
 0.796
SFA58337.1
Type IV secretion system protein VirB9.
  
  
 0.784
SFA58333.1
Type IV secretion system protein VirB10.
  
  
 0.782
SFA61855.1
Type IV secretion system protein VirB8.
  
 
 0.775
SFA58357.1
Hypothetical protein.
       0.773
SFA58374.1
Transglycosylase SLT domain-containing protein.
       0.763
SFA43458.1
Type IV secretion system protein VirB4.
  
 
 0.710
Your Current Organism:
Paracoccus halophilus
NCBI taxonomy Id: 376733
Other names: CGMCC 1.6117, JCM 14014, Paracoccus halophilus Liu et al. 2008, Paracoccus sp. HN-182, strain HN-182
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.