STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA58854.1Aspartate/methionine/tyrosine aminotransferase. (397 aa)    
Predicted Functional Partners:
dapE
Succinyldiaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
 
  
 0.937
argD
Acetylornithine aminotransferase apoenzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.936
SFA58858.1
DNA translocase FtsK.
  
  
 0.913
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
    
 0.911
SFA38063.1
Succinyl-diaminopimelate desuccinylase.
    
 0.874
SFA54351.1
Glutamate synthase (NADPH) large subunit.
    
 0.860
SFA44498.1
Aspartate aminotransferase.
  
  
0.769
SFA60581.1
Aspartate/methionine/tyrosine aminotransferase.
  
  
 0.766
SFA38657.1
Indolepyruvate ferredoxin oxidoreductase.
    
 0.749
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.748
Your Current Organism:
Paracoccus halophilus
NCBI taxonomy Id: 376733
Other names: CGMCC 1.6117, JCM 14014, Paracoccus halophilus Liu et al. 2008, Paracoccus sp. HN-182, strain HN-182
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