STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA59411.1Type IV secretion system protein TrbL. (451 aa)    
Predicted Functional Partners:
SFA59406.1
Type IV secretion system protein VirB5.
 
  
  0.971
SFA59419.1
P-type conjugative transfer protein TrbJ.
 
  
 0.970
SFA59428.1
Type IV secretion system protein VirB3.
 
  
  0.968
SFA59433.1
Type IV secretion system protein VirB2.
 
  
  0.967
SFA59398.1
Type IV secretion system protein VirB10.
 
  
  0.964
SFA59401.1
Type IV secretion system protein VirB9.
 
  
  0.964
SFA59424.1
Type IV secretion system protein VirB4.
 
  
  0.962
SFA59394.1
Hypothetical protein.
 
     0.930
SFA59437.1
Type IV secretion system protein VirB11.
 
  
 0.886
SFA43463.1
P-type conjugative transfer protein TrbJ.
 
  
 0.879
Your Current Organism:
Paracoccus halophilus
NCBI taxonomy Id: 376733
Other names: CGMCC 1.6117, JCM 14014, Paracoccus halophilus Liu et al. 2008, Paracoccus sp. HN-182, strain HN-182
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.