STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA59442.1Hypothetical protein. (142 aa)    
Predicted Functional Partners:
SFA59447.1
Type IV secretion system protein VirD4.
 
     0.929
SFA59452.1
Type IV secretory pathway, VirD2 components (relaxase).
 
     0.929
SFA59428.1
Type IV secretion system protein VirB3.
 
     0.849
SFA59470.1
Conjugative transfer signal peptidase TraF.
 
     0.830
SFA59460.1
Uncharacterized conserved protein, DUF736 family.
 
     0.812
SFA59419.1
P-type conjugative transfer protein TrbJ.
 
     0.808
SFA59493.1
Helix-turn-helix domain-containing protein.
 
     0.806
SFA59474.1
Protein of unknown function.
 
     0.786
SFA59488.1
Plasmid replication initiator protein.
 
     0.763
SFA59433.1
Type IV secretion system protein VirB2.
 
     0.759
Your Current Organism:
Paracoccus halophilus
NCBI taxonomy Id: 376733
Other names: CGMCC 1.6117, JCM 14014, Paracoccus halophilus Liu et al. 2008, Paracoccus sp. HN-182, strain HN-182
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.