Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ATP_00002Hypothetical protein; Paralog group: ATP_00002, ATP_00496. (181 aa)    
Predicted Functional Partners:
znuB
ABC-type Mn/Zn transport system, permease component; Paralog group: ATP_00003, ATP_00495.
       0.461
znuB-2
ABC-type Mn/Zn transport system, permease component; Paralog group: ATP_00004, ATP_00494.
       0.461
znuC
ABC-type Mn/Zn transport system, ATPase component; Paralog group: ATP_00005, ATP_00493.
       0.461
Your Current Organism:
Phytoplasma mali
NCBI taxonomy Id: 37692
Other names: Apple proliferation mycoplasma-like organism, Apple proliferation phytoplasma, C. Phytoplasma mali, Candidatus Phytoplasma mali
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