Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CFOL_v3_01204Uncharacterized protein. (1134 aa)    
Predicted Functional Partners:
CFOL_v3_31806
Prp19_bind domain-containing protein.
   
 0.954
CFOL_v3_31493
PRP38 domain-containing protein.
   
 0.946
CFOL_v3_09331
DEAD domain-containing protein/Helicase_C domain-containing protein.
   
 0.919
CFOL_v3_10959
Zf-met domain-containing protein.
    
  0.906
CFOL_v3_31299
DUF4378 domain-containing protein/VARLMGL domain-containing protein.
    
  0.906
CFOL_v3_03184
Cwf_Cwc_15 domain-containing protein.
   
 0.904
CFOL_v3_17962
RRM_1 domain-containing protein.
   
 0.887
CFOL_v3_25661
WD40 domain-containing protein.
    
 0.881
CFOL_v3_33179
SKIP_SNW domain-containing protein.
   
 0.881
CFOL_v3_33989
WD40 domain-containing protein.
    
 0.881
Your Current Organism:
Cephalotus follicularis
NCBI taxonomy Id: 3775
Other names: C. follicularis, Cephalotus follicularis Labill.
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