STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IW18_03615NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)    
Predicted Functional Partners:
IW18_03605
Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.843
IW18_03610
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
IW18_15530
General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.650
IW18_03620
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.593
IW18_03635
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GbsR family.
 
     0.543
IW18_03625
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.539
IW18_07885
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.537
IW18_16135
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.528
IW18_12120
ZIP family metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.524
IW18_17995
General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.
   
    0.517
Your Current Organism:
Flavobacterium hibernum
NCBI taxonomy Id: 37752
Other names: ACAM 376, ATCC 51468, CIP 105745, DSM 12611, F. hibernum, NCTC 13514
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