STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IW18_14215TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1051 aa)    
Predicted Functional Partners:
IW18_14220
Glycan metabolism protein RagB; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.920
IW18_10160
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.777
IW18_13125
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.773
IW18_16115
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.713
IW18_20720
Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.691
IW18_03785
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.685
IW18_13530
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.675
IW18_05405
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.654
IW18_19670
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.653
IW18_13110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.622
Your Current Organism:
Flavobacterium hibernum
NCBI taxonomy Id: 37752
Other names: ACAM 376, ATCC 51468, CIP 105745, DSM 12611, F. hibernum, NCTC 13514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.