STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IW18_14480BatB protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)    
Predicted Functional Partners:
IW18_14485
BatC protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.946
IW18_01410
Magnesium chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.925
IW18_14465
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.899
IW18_14460
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.896
IW18_14490
BatD protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.895
IW18_14470
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.877
IW18_14475
Aerotolerance regulator BatA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
0.870
IW18_14495
BatE protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.828
IW18_09530
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.697
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.668
Your Current Organism:
Flavobacterium hibernum
NCBI taxonomy Id: 37752
Other names: ACAM 376, ATCC 51468, CIP 105745, DSM 12611, F. hibernum, NCTC 13514
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