STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IW18_20460Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (916 aa)    
Predicted Functional Partners:
IW18_06150
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.677
IW18_20455
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.659
IW18_20450
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.631
IW18_08270
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.581
IW18_01765
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family.
 
   0.577
IW18_08195
GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.577
IW18_06710
Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.543
IW18_21690
G-D-S-L family lipolytic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.542
IW18_19780
Alginate O-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane-bound acyltransferase family.
   
   0.539
IW18_19785
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.539
Your Current Organism:
Flavobacterium hibernum
NCBI taxonomy Id: 37752
Other names: ACAM 376, ATCC 51468, CIP 105745, DSM 12611, F. hibernum, NCTC 13514
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