STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACR12725.1Type IV / VI secretion system protein, DotU family; Identified by match to protein family HMM TIGR03349. (302 aa)    
Predicted Functional Partners:
ACR10843.1
Type VI secretion lipoprotein, VC_A0113 family; Identified by match to protein family HMM TIGR03352.
 
  
 0.980
ACR13493.1
Type VI secretion protein, VC_A0114 family; Identified by match to protein family HMM PF05936; match to protein family HMM TIGR03353.
 
  
 0.973
icmF
Type VI secretion protein IcmF; Identified by match to protein family HMM PF06744; match to protein family HMM PF06761; match to protein family HMM TIGR03348.
 
 
 0.965
ACR11765.1
Type VI secretion-associated protein, BMA_A0400 family; Identified by match to protein family HMM TIGR03373.
 
  
 0.959
ACR12416.1
Type VI secretion protein, EvpB/family; Identified by match to protein family HMM PF05943; match to protein family HMM TIGR03355.
 
  
 0.951
ACR14729.1
Type VI secretion protein, EvpB/family; Identified by match to protein family HMM PF05943; match to protein family HMM TIGR03355.
 
  
 0.951
ACR11040.1
Type VI secretion protein, VC_A0107 family; Identified by match to protein family HMM PF05591; match to protein family HMM TIGR03358.
 
  
 0.951
ACR14304.1
Type VI secretion system FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM TIGR03354.
 
  
 0.948
vasA
Type VI secretion protein, VC_A0110 family; Identified by match to protein family HMM PF05947; match to protein family HMM TIGR03359.
 
  
 0.923
ACR11888.1
Type VI secretion system lysozyme-related protein; Identified by match to protein family HMM PF04965; match to protein family HMM TIGR03357.
 
  
 0.894
Your Current Organism:
Teredinibacter turnerae T7901
NCBI taxonomy Id: 377629
Other names: T. turnerae T7901, Teredinibacter turnerae str. T7901, Teredinibacter turnerae strain T7901
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.