STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRH_01200Hypothetical protein. (108 aa)    
Predicted Functional Partners:
copA
Putative copper-transporting ATPase.
 
  
 0.912
copZ
Copper chaperone CopZ.
  
  
 0.819
KRH_20430
Putative esterase family protein.
  
  
 0.658
KRH_10130
Mycothiol-dependent formaldehyde dehydrogenase; Protein synonym:S-nitrosomycothiol reductase.
  
  
 0.648
adh-2
Alcohol dehydrogenase.
  
  
 0.648
KRH_07320
Putative cadmium-transporting ATPase.
 
  
 0.632
KRH_01210
Hypothetical membrane protein.
       0.553
pheT
phenylalanyl-tRNA synthetase beta chain; Protein synonym:PheRS; protein synonym:phenylalanine--tRNA ligase; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.465
Your Current Organism:
Kocuria rhizophila
NCBI taxonomy Id: 378753
Other names: K. rhizophila DC2201, Kocuria rhizophila ATCC 9341, Kocuria rhizophila DC2201, Kocuria rhizophila DSM 348, Kocuria rhizophila NBRC 103217, Kocuria rhizophila str. DC2201, Kocuria rhizophila strain DC2201, Micrococcus luteus ATCC 9341
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